##// END OF EJS Templates
Defines fuzzing operations...
Defines fuzzing operations Fuzzinf operations are operations that can be executed on a variable during tests. For now, only the "variable creation" operation is implemented

File last commit:

r1121:98220c931c83
r1171:1d0fdfceb8fb
Show More
AmdaResultParserHelper.cpp
432 lines | 15.6 KiB | text/x-c | CppLexer
/ plugins / amda / src / AmdaResultParserHelper.cpp
#include "AmdaResultParserHelper.h"
#include <Common/DateUtils.h>
#include <Common/SortUtils.h>
#include <Data/DataSeriesUtils.h>
#include <Data/ScalarSeries.h>
#include <Data/SpectrogramSeries.h>
#include <Data/Unit.h>
#include <Data/VectorSeries.h>
#include <QtCore/QDateTime>
#include <QtCore/QRegularExpression>
#include <functional>
Q_LOGGING_CATEGORY(LOG_AmdaResultParserHelper, "AmdaResultParserHelper")
namespace {
// ///////// //
// Constants //
// ///////// //
/// Separator between values in a result line
const auto RESULT_LINE_SEPARATOR = QRegularExpression{QStringLiteral("\\s+")};
/// Format for dates in result files
const auto DATE_FORMAT = QStringLiteral("yyyy-MM-ddThh:mm:ss.zzz");
// /////// //
// Methods //
// /////// //
/**
* Checks that the properties contain a specific unit and that this unit is valid
* @param properties the properties map in which to search unit
* @param key the key to search for the unit in the properties
* @param errorMessage the error message to log in case the unit is invalid
* @return true if the unit is valid, false it it's invalid or was not found in the properties
*/
bool checkUnit(const Properties &properties, const QString &key, const QString &errorMessage)
{
auto unit = properties.value(key).value<Unit>();
if (unit.m_Name.isEmpty()) {
qCWarning(LOG_AmdaResultParserHelper()) << errorMessage;
return false;
}
return true;
}
QDateTime dateTimeFromString(const QString &stringDate) noexcept
{
#if QT_VERSION >= QT_VERSION_CHECK(5, 8, 0)
return QDateTime::fromString(stringDate, Qt::ISODateWithMs);
#else
return QDateTime::fromString(stringDate, DATE_FORMAT);
#endif
}
/// Converts a string date to a double date
/// @return a double that represents the date in seconds, NaN if the string date can't be converted
double doubleDate(const QString &stringDate) noexcept
{
// Format: yyyy-MM-ddThh:mm:ss.zzz
auto dateTime = dateTimeFromString(stringDate);
dateTime.setTimeSpec(Qt::UTC);
return dateTime.isValid() ? DateUtils::secondsSinceEpoch(dateTime)
: std::numeric_limits<double>::quiet_NaN();
}
/**
* Reads a line from the AMDA file and tries to extract a x-axis data and value data from it
* @param xAxisData the vector in which to store the x-axis data extracted
* @param valuesData the vector in which to store the value extracted
* @param line the line to read to extract the property
* @param valuesIndexes indexes of insertion of read values. For example, if the line contains three
* columns of values, and valuesIndexes are {2, 0, 1}, the value of the third column will be read
* and inserted first, then the value of the first column, and finally the value of the second
* column.
* @param fillValue value that tags an invalid data. For example, if fillValue is -1 and a read
* value is -1, then this value is considered as invalid and converted to NaN
*/
void tryReadResult(std::vector<double> &xAxisData, std::vector<double> &valuesData,
const QString &line, const std::vector<int> &valuesIndexes,
double fillValue = std::numeric_limits<double>::quiet_NaN())
{
auto lineData = line.split(RESULT_LINE_SEPARATOR, QString::SkipEmptyParts);
// Checks that the line contains expected number of values + x-axis value
if (static_cast<size_t>(lineData.size()) == valuesIndexes.size() + 1) {
// X : the data is converted from date to double (in secs)
auto x = doubleDate(lineData.at(0));
// Adds result only if x is valid. Then, if value is invalid, it is set to NaN
if (!std::isnan(x)) {
xAxisData.push_back(x);
// Values
for (auto valueIndex : valuesIndexes) {
bool valueOk;
// we use valueIndex + 1 to skip column 0 (x-axis value)
auto value = lineData.at(valueIndex + 1).toDouble(&valueOk);
if (!valueOk) {
qCWarning(LOG_AmdaResultParserHelper())
<< QObject::tr(
"Value from (line %1, column %2) is invalid and will be "
"converted to NaN")
.arg(line, valueIndex);
value = std::numeric_limits<double>::quiet_NaN();
}
// Handles fill value
if (!std::isnan(fillValue) && !std::isnan(value) && fillValue == value) {
value = std::numeric_limits<double>::quiet_NaN();
}
valuesData.push_back(value);
}
}
else {
qCWarning(LOG_AmdaResultParserHelper())
<< QObject::tr("Can't retrieve results from line %1: x is invalid").arg(line);
}
}
else {
qCWarning(LOG_AmdaResultParserHelper())
<< QObject::tr("Can't retrieve results from line %1: invalid line").arg(line);
}
}
/**
* Reads a line from the AMDA file and tries to extract a property from it
* @param properties the properties map in which to put the property extracted from the line
* @param key the key to which the property is added in the properties map
* @param line the line to read to extract the property
* @param regexes the expected regexes to extract the property. If the line matches one regex, the
* property is generated
* @param fun the function used to generate the property
* @return true if the property could be generated, false if the line does not match the regex, or
* if a property has already been generated for the key
*/
template <typename GeneratePropertyFun>
bool tryReadProperty(Properties &properties, const QString &key, const QString &line,
const std::vector<QRegularExpression> &regexes, GeneratePropertyFun fun)
{
if (properties.contains(key)) {
return false;
}
// Searches for a match among all possible regexes
auto hasMatch = false;
for (auto regexIt = regexes.cbegin(), end = regexes.cend(); regexIt != end && !hasMatch;
++regexIt) {
auto match = regexIt->match(line);
auto hasMatch = match.hasMatch();
if (hasMatch) {
properties.insert(key, fun(match));
}
}
return hasMatch;
}
/**
* Reads a line from the AMDA file and tries to extract a data from it. Date is converted to double
* @sa tryReadProperty()
*/
bool tryReadDate(Properties &properties, const QString &key, const QString &line,
const std::vector<QRegularExpression> &regexes, bool timeUnit = false)
{
return tryReadProperty(properties, key, line, regexes, [timeUnit](const auto &match) {
return QVariant::fromValue(doubleDate(match.captured(1)));
});
}
/**
* Reads a line from the AMDA file and tries to extract a double from it
* @sa tryReadProperty()
*/
bool tryReadDouble(Properties &properties, const QString &key, const QString &line,
const std::vector<QRegularExpression> &regexes)
{
return tryReadProperty(properties, key, line, regexes, [](const auto &match) {
bool ok;
// If the value can't be converted to double, it is set to NaN
auto doubleValue = match.captured(1).toDouble(&ok);
if (!ok) {
doubleValue = std::numeric_limits<double>::quiet_NaN();
}
return QVariant::fromValue(doubleValue);
});
}
/**
* Reads a line from the AMDA file and tries to extract a vector of doubles from it
* @param sep the separator of double values in the line
* @sa tryReadProperty()
*/
bool tryReadDoubles(Properties &properties, const QString &key, const QString &line,
const std::vector<QRegularExpression> &regexes,
const QString &sep = QStringLiteral(","))
{
return tryReadProperty(properties, key, line, regexes, [sep](const auto &match) {
std::vector<double> doubleValues{};
// If the value can't be converted to double, it is set to NaN
auto values = match.captured(1).split(sep);
for (auto value : values) {
bool ok;
auto doubleValue = value.toDouble(&ok);
if (!ok) {
doubleValue = std::numeric_limits<double>::quiet_NaN();
}
doubleValues.push_back(doubleValue);
}
return QVariant::fromValue(doubleValues);
});
}
/**
* Reads a line from the AMDA file and tries to extract a unit from it
* @sa tryReadProperty()
*/
bool tryReadUnit(Properties &properties, const QString &key, const QString &line,
const std::vector<QRegularExpression> &regexes, bool timeUnit = false)
{
return tryReadProperty(properties, key, line, regexes, [timeUnit](const auto &match) {
return QVariant::fromValue(Unit{match.captured(1), timeUnit});
});
}
} // namespace
// ////////////////// //
// ScalarParserHelper //
// ////////////////// //
bool ScalarParserHelper::checkProperties()
{
return checkUnit(m_Properties, X_AXIS_UNIT_PROPERTY,
QObject::tr("The x-axis unit could not be found in the file"));
}
std::shared_ptr<IDataSeries> ScalarParserHelper::createSeries()
{
return std::make_shared<ScalarSeries>(std::move(m_XAxisData), std::move(m_ValuesData),
m_Properties.value(X_AXIS_UNIT_PROPERTY).value<Unit>(),
m_Properties.value(VALUES_UNIT_PROPERTY).value<Unit>());
}
void ScalarParserHelper::readPropertyLine(const QString &line)
{
tryReadUnit(m_Properties, X_AXIS_UNIT_PROPERTY, line,
{DEFAULT_X_AXIS_UNIT_REGEX, ALTERNATIVE_X_AXIS_UNIT_REGEX}, true);
}
void ScalarParserHelper::readResultLine(const QString &line)
{
tryReadResult(m_XAxisData, m_ValuesData, line, valuesIndexes());
}
std::vector<int> ScalarParserHelper::valuesIndexes() const
{
// Only one value to read
static auto result = std::vector<int>{0};
return result;
}
// /////////////////////// //
// SpectrogramParserHelper //
// /////////////////////// //
bool SpectrogramParserHelper::checkProperties()
{
// Generates y-axis data from bands extracted (take the middle of the intervals)
auto minBands = m_Properties.value(MIN_BANDS_PROPERTY).value<std::vector<double> >();
auto maxBands = m_Properties.value(MAX_BANDS_PROPERTY).value<std::vector<double> >();
if (minBands.size() < 2 || minBands.size() != maxBands.size()) {
qCWarning(LOG_AmdaResultParserHelper()) << QObject::tr(
"Can't generate y-axis data from bands extracted: bands intervals are invalid");
return false;
}
std::transform(
minBands.begin(), minBands.end(), maxBands.begin(), std::back_inserter(m_YAxisData),
[](const auto &minValue, const auto &maxValue) { return (minValue + maxValue) / 2.; });
// Generates values indexes, i.e. the order in which each value will be retrieved (in ascending
// order of the associated bands)
m_ValuesIndexes = SortUtils::sortPermutation(m_YAxisData, std::less<double>());
// Sorts y-axis data accoding to the ascending order
m_YAxisData = SortUtils::sort(m_YAxisData, 1, m_ValuesIndexes);
// Sets fill value
m_FillValue = m_Properties.value(FILL_VALUE_PROPERTY).value<double>();
return true;
}
std::shared_ptr<IDataSeries> SpectrogramParserHelper::createSeries()
{
// Before creating the series, we handle its data holes
handleDataHoles();
return std::make_shared<SpectrogramSeries>(
std::move(m_XAxisData), std::move(m_YAxisData), std::move(m_ValuesData),
Unit{"t", true}, // x-axis unit is always a time unit
m_Properties.value(Y_AXIS_UNIT_PROPERTY).value<Unit>(),
m_Properties.value(VALUES_UNIT_PROPERTY).value<Unit>(),
m_Properties.value(MIN_SAMPLING_PROPERTY).value<double>());
}
void SpectrogramParserHelper::readPropertyLine(const QString &line)
{
// Set of functions to test on the line to generate a property. If a function is valid (i.e. a
// property has been generated for the line), the line is treated as processed and the other
// functions are not called
std::vector<std::function<bool()> > functions{
// values unit
[&] {
return tryReadUnit(m_Properties, VALUES_UNIT_PROPERTY, line,
{SPECTROGRAM_VALUES_UNIT_REGEX});
},
// y-axis unit
[&] {
return tryReadUnit(m_Properties, Y_AXIS_UNIT_PROPERTY, line,
{SPECTROGRAM_Y_AXIS_UNIT_REGEX});
},
// min sampling
[&] {
return tryReadDouble(m_Properties, MIN_SAMPLING_PROPERTY, line,
{SPECTROGRAM_MIN_SAMPLING_REGEX});
},
// max sampling
[&] {
return tryReadDouble(m_Properties, MAX_SAMPLING_PROPERTY, line,
{SPECTROGRAM_MAX_SAMPLING_REGEX});
},
// fill value
[&] {
return tryReadDouble(m_Properties, FILL_VALUE_PROPERTY, line,
{SPECTROGRAM_FILL_VALUE_REGEX});
},
// min bounds of each band
[&] {
return tryReadDoubles(m_Properties, MIN_BANDS_PROPERTY, line,
{SPECTROGRAM_MIN_BANDS_REGEX});
},
// max bounds of each band
[&] {
return tryReadDoubles(m_Properties, MAX_BANDS_PROPERTY, line,
{SPECTROGRAM_MAX_BANDS_REGEX});
},
// start time of data
[&] {
return tryReadDate(m_Properties, START_TIME_PROPERTY, line,
{SPECTROGRAM_START_TIME_REGEX});
},
// end time of data
[&] {
return tryReadDate(m_Properties, END_TIME_PROPERTY, line, {SPECTROGRAM_END_TIME_REGEX});
}};
for (auto function : functions) {
// Stops at the first function that is valid
if (function()) {
return;
}
}
}
void SpectrogramParserHelper::readResultLine(const QString &line)
{
tryReadResult(m_XAxisData, m_ValuesData, line, m_ValuesIndexes, m_FillValue);
}
void SpectrogramParserHelper::handleDataHoles()
{
// Fills data holes according to the max resolution found in the AMDA file
auto resolution = m_Properties.value(MAX_SAMPLING_PROPERTY).value<double>();
auto fillValue = m_Properties.value(FILL_VALUE_PROPERTY).value<double>();
auto minBound = m_Properties.value(START_TIME_PROPERTY).value<double>();
auto maxBound = m_Properties.value(END_TIME_PROPERTY).value<double>();
DataSeriesUtils::fillDataHoles(m_XAxisData, m_ValuesData, resolution, fillValue, minBound,
maxBound);
}
// ////////////////// //
// VectorParserHelper //
// ////////////////// //
bool VectorParserHelper::checkProperties()
{
return checkUnit(m_Properties, X_AXIS_UNIT_PROPERTY,
QObject::tr("The x-axis unit could not be found in the file"));
}
std::shared_ptr<IDataSeries> VectorParserHelper::createSeries()
{
return std::make_shared<VectorSeries>(std::move(m_XAxisData), std::move(m_ValuesData),
m_Properties.value(X_AXIS_UNIT_PROPERTY).value<Unit>(),
m_Properties.value(VALUES_UNIT_PROPERTY).value<Unit>());
}
void VectorParserHelper::readPropertyLine(const QString &line)
{
tryReadUnit(m_Properties, X_AXIS_UNIT_PROPERTY, line,
{DEFAULT_X_AXIS_UNIT_REGEX, ALTERNATIVE_X_AXIS_UNIT_REGEX}, true);
}
void VectorParserHelper::readResultLine(const QString &line)
{
tryReadResult(m_XAxisData, m_ValuesData, line, valuesIndexes());
}
std::vector<int> VectorParserHelper::valuesIndexes() const
{
// 3 values to read, in order in the file (x, y, z)
static auto result = std::vector<int>{0, 1, 2};
return result;
}